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Eclipse step by step install instructions
Preparing Java
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Step
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Example
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C:\>java -version
java version "1.6.0_20"
Java(TM) SE Runtime Environment (build 1.6.0_20-b02)
Java HotSpot(TM) Client VM (build 16.3-b01, mixed mode, sharing)
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| CTAKES:Java 1.6 Preparation |
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| CTAKES:Java 1.6 Preparation |
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Preparing Eclipse
If you are going to use Eclipse for development then follow these instructions.
Step | Example |
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1. Download and install Eclipse 4.2+.
(optional) It is recommended that you start |
2. It is possible that some commands and programs can find the Java runtime that you want to be used but it is best to set the JAVA_HOME environment variable. Set the value of JAVA_HOME to the absolute path of the root of the Java Runtime environment that you want UIMA and cTAKES to use.
Windows:
Right-click on Computer > Properties > Advanced System Settings > Advanced tab > Environment Variables button > New button for System variables. Once the values are entered click OK until you are out of the dialog series.
Linux:
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export JAVA_HOME=<path>
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Image Removed
Preparing Eclipse
If you are going to use Eclipse for development then follow these instructions.
Step | Example |
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1. Download and install Eclipse 4.2+.
(optional) It is recommended that you start a new workspace to keep your cTAKES projects separate from other work. | No example |
2. Subversion Eclipse plug-in (based on Subversive site). We will use the one called "Subversive - SVN Team Provider"
Help -> Install New Software...
Select the current Eclipse release (in the case of Eclipse 4 it is Juno) for the "Work with" field:
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Juno - http://download.eclipse.org/releases/juno |
Expand the Collaboration category.
Select "Subversive SVN Team Provider".
Click Next.
Click Next.
Agree to the license agreement.
Click Finish.
Restart Eclipse.
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3. Subversion team provider connectors 1.7+.
After restarting Eclipse a dialog will ask you to install an SVN Kit for the Team Provider.
Select SVN Kit 1.7 or greater.
Click Finish.
Click Next.
Click Next.
Agree to the license agreement.
Click Finish.
Accept the security warning (if one appears).
Restart Eclipse.
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4. Maven is already part of Eclipse, but more integration to Maven commands is needed.
Help -> Install New Software...
Select the current Eclipse release (in the case of Eclipse 4 it is Juno) for the "Work with" field:
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Juno - http://download.eclipse.org/releases/juno |
Expand the Collaboration category.
Select "m2e - Maven Integration for Eclipse".
Click Next.
Click Finish.
Restart Eclipse.
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5. Maven SCM connector.
File -> Import ... -> Maven -> Check out Maven Projects from SCM.
Click Next.
Click the "m2e Marketplace" link.
You are now in the m2e Marketplace not the Eclipse Marketplace.
Scroll to and select m2e-subversive.
Click Finish.
Leave the defaults to install the "Maven SCM Handler for Subversive" and click Next.
Click Next.
Accept the license agreement.
Click Finish.
Accept the security warning (if one appears).
Restart Eclipse.
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Command line step by step install instructions
Preparing Java
| Include Page |
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| CTAKES:Java 1.6 Preparation |
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| CTAKES:Java 1.6 Preparation |
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Preparing command line tools
Step | Example |
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1. Install an SVN client.
Windows:
We used a binary package of Apache Subversion from SlikSVN.
Apache has a larger list here.
Download and run the MSI file.
Click Next.
Accept the license agreement.
Click Next.
Click Next.
Select Typical.
Select Install.
Wait
Click Finish.
Exit and restart any command prompts that were open.
Linux:
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sudo apt-get install subversion |
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Run svn --version to check the setup |
| Windows:
Linux:
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Suggested packages:
subversion-tools
The following NEWextra packages will be installed:
subversion
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 385kB of archives.
After this operation, 4,391kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ lucid-updates/main subversion 1.6.6dfsg-2ubuntu1.3 \[385kB\]
Fetched 385kB in 0s (2,396kB/s)
Selecting previously deselected package subversion.
(Reading database ... 131403 files and directories currently installed.)
Unpacking subversion (from .../subversion_1.6.6dfsg-2ubuntu1.3_amd64.deb) ...
Processing triggers for man-dblibapr1 libaprutil1 libneon27-gnutls libsvn1
Suggested packages:
subversion-tools db4.8-util
The following NEW packages will be installed:
libapr1 libaprutil1 libneon27-gnutls libsvn1 subversion
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Processing triggers for python-central ...
Processing triggers for man-db ...
Setting up libapr1 (1.4.2-7ubuntu2) ...
Setting up libaprutil1 (1.3.9+dfsg-5ubuntu3) ...
Setting up libneon27-gnutls (0.29.5-3) ...
Setting up libsvn1 (1.6.12dfsg-4ubuntu2) ...
Setting up subversion (1.6.6dfsg12dfsg-2ubuntu1.34ubuntu2) ... |
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2. Install a Maven 3.0+ client.
Windows:
We downloaded Apache Maven file apache-maven-3.0.4-bin.zip. Install instructions are on the same page.
Unzip the file to the root drive.
C:\apache-maven-3.0.4 will be your MAVEN_HOME.
Linux:
We downloaded Apache Maven file apache-maven-3.0.4-bin.tar.gz. Install instructions are on the same page.
Unzip the file to /usr/local/apache-maven-3.0.4 which will be your MAVEN_HOME.
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cd /tmp
wget http://apache.mirrors.pair.com/maven/maven-3/3.0.4/binaries/apache-maven-3.0.4-bin.tar.gz
sudo tar -xvf apache-maven-3.0.4-bin.tar.gz -C /usr/local |
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Linux:
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3. Set the Maven environment variable values -
M2_HOME=<MAVEN_HOME>
M2=<MAVEN_HOME>/bin
PATH=<existing Path>;<MAVEN_HOME>
where MAVEN_HOME is the path you unzipped to.
Windows:
Right-click on Computer > Properties > Advanced System Settings > Advanced tab > Environment Variables button > New button for User variables. Once the values are entered click OK until you are out of the dialog series.
Linux:
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export M2_HOME=/usr/local/apache-maven-3.0.4
export M2=$M2_HOME/bin
export PATH=$PATH:$M2 |
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Run mvn --version to check the setup |
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Linux:
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tbleeker@system:~$ export
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declare -x M2="/usr/local/apache-maven-3.0.4/bin"
declare -x M2_HOME="/usr/local/apache-maven-3.0.4"
declare -x PATH="/usr/lib/jvm/java-6-sun/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/apache-maven-3.0.4/bin" |
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3. Checkout the cTAKES project.
Windows/Linux:
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svn co https://svn.apache.org/repos/asf/incubator/ctakes/trunk cTAKES-3.0 |
The parameter on the end will be created as a new directory in your current location.
| Windows:
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C:\>cd \
C:\>svn co https://svn.apache.org/repos/asf/incubator/ctakes/trunk cTAKES-3.0
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A ctakes-3.0\ctakes-type-system\pom.xml
A ctakes-3.0\ctakes-type-system\.settings
A ctakes-3.0\ctakes-type-system\.settings\org.eclipse.jdt.core.prefs
A ctakes-3.0\ctakes-type-system\.settings\org.eclipse.core.resources.prefs
A ctakes-3.0\ctakes-type-system\desc
A ctakes-3.0\DISCLAIMER
Checked out revision 1433729.
C:\>cd cTAKES-3.0
C:\cTAKES-3.0> |
Linux:
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tbleeker@system:~$ cd /
tbleeker@system:/$ svn co https://svn.apache.org/repos/asf/incubator/ctakes/trunk cTAKES-3.0
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A ctakes-3.0/ctakes-type-system/pom.xml
A ctakes-3.0/ctakes-type-system/.settings
A ctakes-3.0/ctakes-type-system/.settings/org.eclipse.jdt.core.prefs
A ctakes-3.0/ctakes-type-system/.settings/org.eclipse.core.resources.prefs
A ctakes-3.0/ctakes-type-system/desc
A ctakes-3.0/DISCLAIMER
Checked out revision 1434842.
tbleeker@system:/$ cd cTAKES-3.0/
tbleeker@system:/cTAKES-3.0$ |
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4. Compile the complete set.
Make sure you are in the proper directory.
Windows/Linux:
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mvn clean compile package |
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [59.140s]
[INFO] Apache cTAKES common type system .................. SUCCESS [41.856s]
[INFO] Apache cTAKES utils ............................... SUCCESS [6.255s]
[INFO] Apache cTAKES core ................................ SUCCESS [17.940s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.148s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.027s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [4.118s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [1:14.740s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [5.975s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [7.831s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.743s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [9.516s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [32.386s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.152s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [12.200s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.446s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [13.634s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [8.923s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.958s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [7.566s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [8.377s]
[INFO] Apache cTAKES Pad Term Spotter .................... SUCCESS [9.048s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [33.993s]
[INFO] Apache cTAKES Distribution ........................ SUCCESS [17:59.809s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 24:22.120s
[INFO] Finished at: Wed Jan 16 17:44:35 CST 2013
[INFO] Final Memory: 41M/181M
[INFO] ------------------------------------------------------------------------ |
Linux:
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