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Prerequisites: Java JDK 1.6+, Eclipse IDE 4.2+, subversive plugin (or svn equivalent with appropriate SVN team provider connectors), m2e plugin (or mvn equivalent)
| Note |
|---|
The following location is the main trunk of cTAKES. See how cTAKES treats the trunk, branches, and tags in the developer FAQs. |
- Import Project > Maven > Checkout Maven Project from SCM and use: svn and https://svn.apache.org/repos/asf/incubator/ctakes/tags/ctakes-3.0.0-incubatingtrunk
- Select all projects.
- Wait until Eclipse downloads and builds all of your projects (it may take up to 30 minutes depending on the machine).
- The various build helpers should run jcasgen and builds build the projects for you. There should not be any reason to run mvn install, etc.
- Merge the version-matching resources ZIP file from http://sourceforge.net/projects/ctakesresources/files/ into your ctakes-dictionary-lookup project.
- (Optional) If you would like to launch the UIMA CVD or CPE GUI, run ctakes-clinical-pipeline/resources/launch/UIMA_<CVD | CPE>GUI--clinical_documents pipeline.launch
- (Optional) UIMA plug-ins called "UIMA Eclipse tooling and runtime support" can be installed from update site: http://www.apache.org/dist/uima/eclipse-update-site
...
Prerequisites: Java JDK 1.6+, SVN, Maven 3.0+
| Note |
|---|
The following location is the main trunk of cTAKES. See how cTAKES treats the trunk, branches, and tags in the developer FAQs. |
- svn svn co https://svn.apache.org/repos/asf/incubator/ctakes/tags/trunk ctakes-3.0.0-incubating ctakes-3.0
- mvn clean compile package
- Running the mvn package command will generate a binary distribution in /ctakes-distribution/target/ctakes-<release>-bin.tar.gz/zip
- Merge the version-matching resources ZIP file from http://sourceforge.net/projects/ctakesresources/files/ into your ctakes-dictionary-lookup project.
- (Optional) If you would like to launch the UIMA CVD or CPE GUI
- with MAVEN_OPTS="-Xmx2g -Xms1g" run mvn -PrunCVD compile
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Step | Example |
|---|
1. Checkout the cTAKES project.
| Note |
|---|
The following location is the main trunk of cTAKES. See how cTAKES treats the trunk, branches, and tags in the developer FAQs.
|
Windows/Linux:
| Code Block |
|---|
cd /
svn co https://svn.apache.org/repos/asf/incubator/ctakes/tags/ctakes-3.0.0-incubating cTAKES-3.0trunk |
The parameter on the end will be created as a new directory in your current location. | Note |
|---|
For Linux, make sure that you have write access to the directory that you are in. |
| Windows:
| Code Block |
|---|
C:\>cd /
C:\>svn co https://svn.apache.org/repos/asf/incubator/ctakes/tags/ctakes-3.0.0-incubating cTAKES-3.0
...
A ctakes-3.0\ctakes-type-system\pom.xml
A ctakes-3.0\ctakes-type-system\.settings
A ctakes-3.0\ctakes-type-system\.settings\org.eclipse.jdt.core.prefs
A ctakes-3.0\ctakes-type-system\.settings\org.eclipse.core.resources.prefs
A ctakes-3.0\ctakes-type-system\desc
A ctakes-3.0\DISCLAIMER
Checked out revision 1433729.
C:\>cd cTAKES-3.0
C:\cTAKES-3.0> |
Linux:
| Code Block |
|---|
tbleeker@system:~$ cd /
tbleeker@system:/$ svn co https://svn.apache.org/repos/asf/incubator/ctakes/tags/ctakes-3.0.0-incubating cTAKES-3.0
...
A ctakes-3.0/ctakes-type-system/pom.xml
A ctakes-3.0/ctakes-type-system/.settings
A ctakes-3.0/ctakes-type-system/.settings/org.eclipse.jdt.core.prefs
A ctakes-3.0/ctakes-type-system/.settings/org.eclipse.core.resources.prefs
A ctakes-3.0/ctakes-type-system/desc
A ctakes-3.0/DISCLAIMER
Checked out revision 1434842.
tbleeker@system:/$ cd cTAKES-3.0/
tbleeker@system:/cTAKES-3.0$ |
|
2. Compile the complete set.
Make sure you are in the proper directory.
Windows/Linux:
| Code Block |
|---|
mvn clean compile package |
| Note |
|---|
For Linux, make sure you are using the user that has access to the files in your cTAKES directory. |
| Windows/Linux:
| Code Block |
|---|
...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [59.140s]
[INFO] Apache cTAKES common type system .................. SUCCESS [41.856s]
[INFO] Apache cTAKES utils ............................... SUCCESS [6.255s]
[INFO] Apache cTAKES core ................................ SUCCESS [17.940s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.148s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.027s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [4.118s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [1:14.740s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [5.975s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [7.831s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.743s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [9.516s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [32.386s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.152s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [12.200s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.446s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [13.634s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [8.923s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.958s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [7.566s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [8.377s]
[INFO] Apache cTAKES Pad Term Spotter .................... SUCCESS [9.048s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [33.993s]
[INFO] Apache cTAKES Distribution ........................ SUCCESS [17:59.809s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 24:22.120s
[INFO] Finished at: Wed Jan 16 17:44:35 CST 2013
[INFO] Final Memory: 41M/181M
[INFO] ------------------------------------------------------------------------
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