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Go through the standard ctakes installation for the distribution you just created: See https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1+User+Install+Guide. For the rest of this document, we assume ctakes is installed in CTAKES_HOME

1.5) Patch YTEX Distro

Some of the install scripts need to be patched (fixed in trunk). Download and unzip  ytex-patch-3.2.0.zip 'over' your installation.  

Linux users: set the shell scripts to executable:

cd CTAKES_HOME/bin
chmod ug+x ant ctakes.profile *.sh

2) Unzip YTEX Libraries

Download and unzip ctakes-ytex-lib-3.1.2-SNAPSHOT.zip 'over' your installation. This contains non-APACHE 2.0 license compliant libraries:

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