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Time | Item | Who | Notes |
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8:00 - 8:15 | Introduction | Marlon Pierce |
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8:15 - 9:00 | CIPRES Gateway Introduction (10 12 min) Hands-on Browser interface (20 28 min) Create Account/Login Sequence Alignment Tree Inference REST Interface (10 min)Feedback/Questions (5 min) | Mark Miller | Useful links http://www.phylo.org/portal2 CIPRES Gateway http://www.phylo.org/tools/tool_tests/mafft_input.txt Input for sequence alignment http://etetoolkit.org/treeview/ Second Party Tree Viewer |
9:00 - 9:45 | NeuroScience Gateway Overview: What does NSG do? Hands on: Download Jones model from ModelDB site, and run on Comet using the NEURON tool. Feedback/Questions | Amit Majumdar | |
9:45 - 10:00 | Summary of Session 1 Summary and Preview of Session 2 | Marlon Pierce | |
10:00 - 10:30 | Break: Install Java and SEAGrid desktop client, create an account | ||
10:30 - 11:15 | SEAGrid Gateway Overview Hands on Create accounts Simple file upload and submit CSD (crystal structure DB search) to create an input and use Nanocad for further manipulation and submit a job. Feedback | Sudhakar Pamidighantam |
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11:15 - 11:45 | PGA Overview Hands on: WRF Feedback | Suresh Marru | |
11:45 - 12:00 | Summary and follow on: Bring us your Gateway needs! Building science gateways with SciGaP tutorial preview More about the XSEDE science gateways program Science Gateway Institute | Marlon Pierce | Slides: XSEDE16-SciGaP-Closing.pptx |