THIS IS A TEST INSTANCE. ALL YOUR CHANGES WILL BE LOST!!!!
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to build pipelines from cTAKES components and to run pipelines pipelines.
- select cTAKES components to include
- view descriptions of the components, and inputs, outputs, parameters, dependencies
- implemented using the new Pipe Bits
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to build a custom dictionary from a local UMLS installation.
Temporal Module
multiple new annotators to discover meaningful events, temporal expressions, and their relations from clinical text and place them on a timeline.
Example Clinical Documents with Manual Annotations
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pipe bits document cTAKES modules - see cTAKES GUI.
- document descriptions of components, and inputs, outputs, parameters, dependencies
- implemented as Java annotations
- simplifies pipeline builders
- indicates whether a component is a Collection Reader, Annotator, or a Cas Consumer (Writer)
Changes
if you've written code that directly uses classes within cTAKES, you could be affected by the following:
- Three older, lesser-used assertion-related classes were removed from cTAKES to remove a dependency on jars that are not in maven central:
- AssertionAnalysisEngine
- AssertionAnalysisEngineFit
- ConceptConverterAnalysisEngine
- Class IdentifiedAnnotationUtil was renamed to OntologyConceptUtil