Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

The following typographical styles are used:

  • Monospace text indicates file system paths or file names.
  • <Monospace text in angle brackets> indicates any part of text that you type in which must be replaced with something else, for example, file system paths or file names, to match your configuration or your preference.
  • Bold monospace text indicates a command that you need to type on the command line or a system path or file name that needs to be replaced. Command line arguments for which you need to substitute a value are surrounded by angle brackets. For long commands you might see a caret symbol (^ Windows) or a backslash symbol (\ Linux) dividing lines of the command. This allows the command to be cut and pasted across multiple rows. An operating system icon is used to distinguish between the two.

For example,
java -cp <classpath> edu.mayo.uima.Class <arg1> <arg2>
Where:
<classpath> is the absolute path to the class being executed
<arg1> is an argument
<arg2> is another argument

Other conventions

Code Block
langhtml
Monospace text enclosed in a box of this style
indicates contents in a file.
Info

A box like this provides additional information or remarks.

Note

A box like this denotes an important part of the steps not to miss.

...

are not part of Apache cTAKES but may be of interest to cTAKES users.

 

Name Site Description License
Anafora  https://github.com/weitechen/anaforaweb-based raw text annotation tool https://github.com/weitechen/anafora#download-anafora
Annotation Viewerposthttps://github.com/GeisingerBTI/AnnotViewerview cTAKES' annotations from XMIs in a batch https://github.com/GeisingerBTI/AnnotViewer/blob/master/LICENSE
MISTpre http://mist-deid.sourceforge.net/ a suite of tools for identifying and redacting External Tools/Applications in free-text medical records See "What license does it have?" on http://mist-deid.sourceforge.net/
     

 

Definitions

Anchor
PII
PII
PII = personally identifiable information

...