THIS IS A TEST INSTANCE. ALL YOUR CHANGES WILL BE LOST!!!!
The following are not part of Apache cTAKES but may be of interest to cTAKES users.
| Name | When used | Site | Description | License | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Anafora | github.com/weitechen/anafora | web-based raw text annotation tool | https://github.com/weitechen/anafora#download-anafora | ||||||||||||||||
| Annotation Viewer | post | github.com/GeisingerBTI/AnnotViewer | view cTAKES' annotations from XMIs in a batch | https://github.com/GeisingerBTI/AnnotViewer/blob/master/LICENSE | |||||||||||||||
| Command line tool | wrapper | github.com/giuseppetotaro/ctakes-clinical-pipeline | run the complete pipeline for annotating clinical documents in plain text format using the built in UMLS (SNOMEDCT and RxNORM) dictionaries from a command line | https://github.com/giuseppetotaro/ctakes-clinical-pipeline#license | |||||||||||||||
| Hadoop, cTAKES integration | github.com/pcodding/hadoop_ctakes#ctakes-integration-code-for-hadoop | allows cTAKES to be invoked on clinical document data presented as Tuples to cTAKES | https://github.com/pcodding/hadoop_ctakes/blob/master/LICENSE | ||||||||||||||||
| MIST | pre | mist-deid.sourceforge.net/ | a suite of tools for identifying and redacting
| See See "What license does it have?" on | |||||||||||||||
| RESTful interface | wrapper | github.com/dirkweissenborn/ctakes-server | a simple REST-server around ctakes clinical pipeline unknown | unknown | |||||||||||||||
| Tika, cTAKES integration | wiki.apache.org/tika/cTAKESParser | detects and extracts from over a thousand different file types | http://www.apache.org/licenses/ | ||||||||||||||||
UMLS and NLM tools such as | www.nlm.nih.gov/research/umls/implementation_resources/applications.html | NLM applications utilize UMLS data | https://uts.nlm.nih.gov//license.html |
Integrations
Definitions
PII = personally identifiable information
...
UMLS = Unified Medical Language System