THIS IS A TEST INSTANCE. ALL YOUR CHANGES WILL BE LOST!!!!
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Table 1. Standard Piper commands.
A A complete runnable pipeline can be created using a reader (or readFiles) and only add commands.
Step-by-step guide
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- Create an empty text file. The standard file extension for piper files is .piper
- To easily add multiple pipeline components from a package not standard to cTAKES, use the package command to point to it.
reader, load and add* commands all take class names or file directories as their first parameter. If the class is not in a standard cTAKES module's cr ae or cc package, or a piper file is not in a standard module's pipeline/ directory then the package or path must be specified for that component / file. Using package simplifies this. The two examples below are functionally equivalent.Gliffy Diagram chrome min name Use of package - To easily add multiple components that use the same parameter, use set to assign a value to that parameter.
- Set a reader for your pipeline. readFiles is a convenience method, equivalent to "reader FileTreeReader".
- If applicable, start with a load of an available piper file. See Table 2 for standard piper files in cTAKES.
- If you
Piper file | Module | Description | Contains |
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DefaultTokenizerPipeline.piper | core | Complete Tokenizer pipeline. | SimpleSegmentAnnotator SentenceDetector TokenizerAnnotatorPTB |
ChunkerSubPipe.piper | chunker | Chunker partial pipeline. | Chunker ChunkAdjuster (NP,NP 1) ChunkAdjuster (NP,NP,NP 2) |
AssertionSubPipe.piper | assertion | Entity attribute partial pipeline. | ClearNLPDependencyParserAE ClearNLPSemanticRoleLabelerAE ConceptConverterAnalysisEngine AssertionAnalysisEngineFit GenericAttributeAnalysisEngine SubjectAttributeAnalysisEngine |
AttributeCleartkSubPipe.piper | assertion | Entity attribute partial pipeline. | ClearNLPDependencyParserAE ClearNLPSemanticRoleLabelerAE PolarityCleartkAnalysisEngine UncertaintyCleartkAnalysisEngine HistoryCleartkAnalysisEngine ConditionalCleartkAnalysisEngine GenericCleartkAnalysisEngine SubjectCleartkAnalysisEngine |
DefaultFastPipeline.piper | clinical-pipeline | Complete Clinical pipeline. | DefaultTokenizerPipeline.piper ContextDependentTokenizerAnnotator POSTagger ChunkerSubPipe.piper DefaultJCasTermAnnotator AttributeCleartkSubPipe.piper |
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