THIS IS A TEST INSTANCE. ALL YOUR CHANGES WILL BE LOST!!!!
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- To run a piper file from the command line, execute the script
bin/runPiperFile -p path/to/piper To run a piper from code use the
main(..)method ofPiperFileRunnerin ctakes-core, or more directly use thePiperFileReaderclass in ctakes-core.There are examples of piper file use in the ctakes-examples module.
- A piper file can also be loaded and run by the Simple Pipeline Fabricator GUI.
| Module | Piper file | Description |
|---|---|---|
| core | DefaultTokenizerPipeline | Complete Tokenizer pipeline. |
| chunker | ChunkerSubPipe | Chunker partial pipeline. |
| assertion | AssertionSubPipe | Entity attribute partial pipeline. |
| assertion | AttributeCleartkSubPipe | Entity attribute partial pipeline. |
| clinical-pipeline | DefaultFastPipeline | Complete Clinical pipeline. |
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| CLI | Parameter Name | Description |
|---|---|---|
| --user | umlsUser , ctakes.umlsuser | UMLS Username for dictionary lookup. |
| --pass | umlsPass , ctakes.umlspw | UMLS Password for dictionary lookup. |
| --xmiOut | OutputDirectory | Adds FileTreeXmiWriter to pipeline. |
Table 4. Additional command line parameters accepted by bin/runPiperFile and PiperFileRunner.
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