THIS IS A TEST INSTANCE. ALL YOUR CHANGES WILL BE LOST!!!!
The following are not part of Apache cTAKES but may be of interest to cTAKES users.
Name | When used | Site | Description | License | |||||||||||||||||
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Anafora | https://github.com/weitechen/anafora | web-based raw text annotation tool | https://github.com/weitechen/anafora#download-anafora | ||||||||||||||||||
Annotation Viewer | post | https://github.com/GeisingerBTI/AnnotViewer | view cTAKES' annotations from XMIs in a batch | https://github.com/GeisingerBTI/AnnotViewer/blob/master/LICENSE | |||||||||||||||||
Command line tool | wrapper | https://github.com/giuseppetotaro/ctakes-clinical-pipeline | run the complete pipeline for annotating clinical documents in plain text format using the built in UMLS (SNOMEDCT and RxNORM) dictionaries from a command line | https://github.com/giuseppetotaro/ctakes-clinical-pipeline#license | |||||||||||||||||
Command line tool | wrapper | github.com/dmitriydligach/ctakes-misc | a simple pipeline that involves dictionary lookup. Mentioned in this post to dev@. | unknown | |||||||||||||||||
Hadoop, cTAKES integration | github.com/pcodding/hadoop_ctakes | allows cTAKES to be invoked on clinical document data presented as Tuples to cTAKES | https://github.com/pcodding/hadoop_ctakes/blob/master/LICENSE | ||||||||||||||||||
MIST | pre | MIST | pre | http://mist-deid.sourceforge.net/ | a suite of tools for identifying and redacting
| See See "What license does it have?" on | |||||||||||||||
RESTful interface | wrapperwrapper | https://github.com/dirkweissenborn/ctakes-server | a simple REST-server around ctakes clinical pipeline unknown | unknown | |||||||||||||||||
Tika, cTAKES integration | wiki.apache.org/tika/cTAKESParser | detects and extracts from over a thousand different file types | http://www.apache.org/licenses/ | ||||||||||||||||||
UMLS and NLM tools such as | https://www.nlm.nih.gov/research/umls/implementation_resources/applications.html | NLM applications utilize UMLS data | https://uts.nlm.nih.gov//license.html |
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Definitions
PII = personally identifiable information
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UMLS = Unified Medical Language System