THIS IS A TEST INSTANCE. ALL YOUR CHANGES WILL BE LOST!!!!
...
Overview of Drug Named Entity Recognition (optional)
...
For additional documentation pertaining to this pipeline see <cTAKES_HOME>/Drug NER/README.
...
DrugAggregateCDAProcessor.xml is also provided to process CDA documents. The aggregate flow will contain the annotator version CdaCasInitializer.xml which will process the document as a Clinic Document Architecture (CDA) wrapped file. Additionally, the Sofa Mappings are enabled for the plaintext output view, which is intended to handle mapping the DTD properties to properties used by the pipeline (e.g. Patient and date meta-data).
...
The results of running the pipeline are written to the output directory as XCAS files. These files can be viewed in the CAS Visual Debugger.
A sample plian text document has been provided for convenience that can be used as input document for the process described above.
...
...
The steps described under DrugNER_PlainText_CPE.xml can be used to process the sample document provided to validate Drug NER pipeline.