Apache Airavata

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Date

Goals

  • Hands-On experience on using science gateways
  • Experience CIPRES, SEAGrid, NSG and Airavata Test-Drive Gateways.
  • Insights from Gateways Experts
  • Create an account on each Gateway
  • Run simple jobs using each Gateway
  • Learn about more the complex features/capabilities of each Gateway

Tutorial Agenda

 

TimeItemWhoNotes
8:00 - 8:15IntroductionMarlon Pierce

8:15 - 9:00

CIPRES Gateway

Introduction (12 min)

Hands-on Browser interface (28 min)

Create Account/Login

Sequence Alignment

Tree Inference

Feedback/Questions (5 min)

 Mark Miller

Useful links

http://www.phylo.org/portal2    CIPRES Gateway

http://www.phylo.org/tools/tool_tests/mafft_input.txt  Input for sequence alignment

http://etetoolkit.org/treeview/    Second Party Tree Viewer

Slides: MarkMiller_XSEDE2016_tutorial1b.pptx

9:00 - 9:45

NeuroScience Gateway

Overview: What does NSG do?

Hands on: Download Jones model from ModelDB site, and run on Comet using the NEURON tool.

Feedback/Questions

Amit Majumdar 
9:45 - 10:00Summary of Session 1 Summary and Preview of Session 2 Marlon Pierce  
10:00 - 10:30Break: Install Java and SEAGrid desktop client, create an account  
10:30 - 11:15

SEAGrid Gateway

Overview

Hands on

Create accounts

Simple file upload and submit

CSD (crystal structure DB search) to create an input and use Nanocad for further manipulation and submit a job.

Feedback

 Sudhakar Pamidighantam
11:15 - 11:45

PGA

Overview

Hands on: WRF

Feedback

Suresh Marru  
11:45 - 12:00

 Summary and follow on: Bring us your Gateway needs!

Building science gateways with SciGaP tutorial preview

More about the XSEDE science gateways program

Science Gateway Institute

Marlon Pierce Slides: XSEDE16-SciGaP-Closing.pptx
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For an overview of Apache Airavata visit the Website - https://airavata.apache.org/