THIS IS A TEST INSTANCE. ALL YOUR CHANGES WILL BE LOST!!!!
The following are not part of Apache cTAKES but may be of interest to cTAKES users.
| Name | When used | Site | Description | License | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Anafora | https://github.com/weitechen/anafora | web-based raw text annotation tool | https://github.com/weitechen/anafora#download-anafora | ||||||||||||||||||
| Annotation Viewer | post | https://github.com/GeisingerBTI/AnnotViewer | view cTAKES' annotations from XMIs in a batch | https://github.com/GeisingerBTI/AnnotViewer/blob/master/LICENSE | |||||||||||||||||
| Command line tool | wrapper | https://github.com/giuseppetotaro/ctakes-clinical-pipeline | A command line tool based on Apache cTAKES in order to run the complete pipeline for annotating clinical documents in plain text format using the built in UMLS (SNOMEDCT and RxNORM) dictionaries .from a command line | https://github.com/giuseppetotaro/ctakes-clinical-pipeline#license | |||||||||||||||||
| Command line tool | wrapper | github.com/dmitriydligach/ctakes-misc | a simple pipeline that involves dictionary lookup. Mentioned in this post to dev@. | unknown | |||||||||||||||||
| Hadoop, cTAKES integration | github.com/pcodding/hadoop_ctakes | allows cTAKES to be invoked on clinical document data presented as Tuples to cTAKES | https://github.com/pcodding/hadoop_ctakes/blob/master/LICENSE | ||||||||||||||||||
| MIST | pre | MIST | pre | http://mist-deid.sourceforge.net/ | a suite of tools for identifying and redacting
| See See "What license does it have?" on | |||||||||||||||
| RESTful interface | wrapper | https://github.com/dirkweissenborn/ctakes-server | a simple REST-server around ctakes clinical pipeline | unknown | |||||||||||||||||
| Tika, cTAKES integration | wiki.apache.org/tika/cTAKESParser | detects and extracts from over a thousand different file types | http://www.apache.org/licenses/ unknown | ||||||||||||||||||
UMLS and NLM tools such as | https://www.nlm.nih.gov/research/umls/implementation_resources/applications.html | NLM applications utilize UMLS data. | https://uts.nlm.nih.gov//license.html |
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Definitions
PII = personally identifiable information
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UMLS = Unified Medical Language System