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The Default Clinical Pipeline is a great place for the new user of a binary installation to start.  New developers should look at the ctakes-examples project to start.

The Default Clinical Pipeline produces the most commonly desired output from cTAKES.  This includes annotations for Anatomical sites, Signs/Symptoms, Procedures, Diseases/Disorders and Medications.  For each annotation there are normalized UMLS CUIs, plus values for negation, uncertainty and subject.

Step-by-step guide

 

Sample Sentence and the Default Clinical Pipeline.

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