THIS IS A TEST INSTANCE. ALL YOUR CHANGES WILL BE LOST!!!!
Apache Airavata
Date
Goals
- Hands-On experience on using science gateways
- Experience CIPRES, SEAGrid, NSG and Airavata Test-Drive Gateways.
- Insights from Gateways Experts
- Create an account on each Gateway
- Run simple jobs using each Gateway
- Learn about more the complex features/capabilities of each Gateway
Tutorial Agenda
| Time | Item | Who | Notes |
|---|---|---|---|
| 1.30 to 1.40 | Welcome | Marlon Pierce |
|
1.40 to 2.30 | CIPRES Gateway Introduction (12 min) Hands-on Browser interface (28 min) Create Account/Login Sequence Alignment Tree Inference Feedback/Questions (5 min) | Mark Miller | Useful links http://www.phylo.org/portal2 CIPRES Gateway http://www.phylo.org/tools/tool_tests/mafft_input.txt Input for sequence alignment http://etetoolkit.org/treeview/ Second Party Tree Viewer |
| 2.30 to 3.00 | NeuroScience Gateway Overview: What does NSG do? Hands on: Download Jones model from ModelDB site, and run on Comet using the NEURON tool. Feedback/Questions | Amit Majumdar | |
| 9:45 - 10:00 | Summary of Session 1 Summary and Preview of Session 2 | Marlon Pierce | |
| 10:00 - 10:30 | Break: Install Java and SEAGrid desktop client, create an account | ||
| 10:30 - 11:15 | SEAGrid Gateway Overview Hands on Create accounts Simple file upload and submit CSD (crystal structure DB search) to create an input and use Nanocad for further manipulation and submit a job. Feedback | Sudhakar Pamidighantam |
|
| 11:15 - 11:45 | PGA Overview Hands on: WRF Feedback | Suresh Marru | |
| 11:45 - 12:00 | Summary and follow on: Bring us your Gateway needs! Building science gateways with SciGaP tutorial preview More about the XSEDE science gateways program Science Gateway Institute | Marlon Pierce | Slides: XSEDE16-SciGaP-Closing.pptx |
Overview
Content Tools
Apps
For an overview of Apache Airavata visit the Website - https://airavata.apache.org/